Download Fiji for your OS, see system requirements, installation instructions, and troubleshooting tips. Anybody interested, please test it and let me know of any issues. Fiji is a distribution of ImageJ that includes many useful plugins contributed by the community. In addition, I uploaded the plugin and its dependencies to a new update site, so you can simply activate the AngioTool update site.Īlso, I didn’t have time to check the functionality of the plugin apart from verifying that it’s UI is being displayed. Here you can download an 'all platforms' version of ImageJ, without a bundled Java or extra extensions. I just pushed some updates to the git repository and cut a release, so it should be possible to get a working AngioTool in Fiji by cloning that git repo and running: mvn =/path/to/your/Fiji.app If you are installing ImageJ on Windows, we strongly recommend that you store your ImageJ.app directory somewhere in your user space (e.g. It does not matter which image is in what channel if you only want an overall image. Image > Color > Merge channels, and do images 1 thru 7, then 8 thru 15 and 16 thru 20. Yes, it’s been a while since I tried to convert AngioTool into a Fiji plugin, with the help of Johannes Schindelin. Hello, You will have to do this in 4 runs as Fiji/ImageJ only handles 7 channels at a time. I have been using Angiotool a little for my analysis and have just found your work on putting it into ImageJ - which would make it very much more useful! I have been trying to add it to my ImageJ and have downloaded the files you put up on this website however form there am unsure how best to upload all the files to ImageJ.
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